Scaffold Ga0326755_003009

Overview

Basic Information

• Taxon OID: 3300034628
• Scaffold ID: Ga0326755_003009
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1707
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009213	Metagenome / Metatranscriptome	321	Y
F058445	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326755_003009_169_459	F058445	AGAAG	MSYIYDDSGNLKNNCLTVTPISKPRNIRGLRTDANWEITAINYDLKHNINHKVSCIFWTKKEALSFLKTGVHKCPVTNQTLYKIKPCKVATNGHNK
Ga0326755_003009_503_958	F009213	AGG	MNKKHYLRTTRNLYYIDEKPQLRVYYSYTTPVALEIDGNLKVSQNQWSVTTGRHLTWIDGGNKQDRLNPEEFNKLVKQHIHKPDILKTVSTVSAMFGIMCNKNEEKTKNKFQKKFFEKIPEMNFPDNWDSLSEEEKSKRLNKVTKIGLKND