Scaffold Ga0326755_001750

Overview

Basic Information

• Taxon OID: 3300034628
• Scaffold ID: Ga0326755_001750
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2463
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F001922	Metagenome	617	Y
F003617	Metagenome / Metatranscriptome	477	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326755_001750_43_501	F003617	N/A	MTAILYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDSLLYENTFQSGAATLSATGTSMHWFTQDIVETIKVRKGNPIDIQLNLITVVTGTNTRQEGYAPVAPYLKTAVMKSFYETGISLHLHPDLSHADGVFKYKKSRISLLGQGG
Ga0326755_001750_502_885	F000730	AGG	MASELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSVHTDSQIDDLINNAPRILNEINKTIAEQKEQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKSL
Ga0326755_001750_885_1409	F001922	N/A	MVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQATIQGGIWLNSLAGFFGVKFPDTLPDWTVKLFTTGYHNITFWQIVQIISVLIIVVEYMQYDRMLKEKGERPNITTGAVFAMIGLGISLVTFPQIIQKFKEMRILSKAPRTDVTKGFGGEPL