Scaffold Ga0310143

Basic Information
Taxon OID	3300034523 Open in IMG/M
Scaffold ID	Ga0310143_01612 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034523 Open in IMG/M

Scaffold ID

Ga0310143_01612 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6140
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6140

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.812	Long. (^o)	-98.262	Alt. (m)	Depth (m)	2943
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.812

Long. (^o)

-98.262

Alt. (m)

Depth (m)

2943

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006138	Metagenome / Metatranscriptome	380	Y
F014487	Metagenome / Metatranscriptome	262	Y
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F093492	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_01612_2_574	F093492	GGTGG	MAFAIVGSSLNSSTTAKVLQRQNLNKEPNGLETIIEAYAIATANRDTIVPEKNTPHSVFSSLKKYPRMVVESVTTEEQDGGITQMLVTYVGLTTSTLPPPIVRLIPTVGAGIYGPPLTIEAEFVTDVNETDFIKGNINATASIKLGNISFGTVNQMPPFINGTQMPANPRPAGAVRRAGAFGQYFGYCVEA
Ga0310143_01612_2002_2790	F025225	GAG	MITVELLNQAKFVHKLQQYQQASKKNMADVINQKLGDVAVTAIGTTYRTNAAQIASELQRVEGQVVTKKVFKPFGLTKSGKVKKRKIGEYVVGYKAKSVSYVGTYKLVNWLLKNRGLATLGKTKQGTGGLGMGNTPGTIGALARRLVAGRKRSINYIRNGWAAAASVFGKRASLTRGDYSQKAIQRLGGGTKADSKKSQMEGIIFNRAGDLDTRYYPVRKRAISGAVKVGMPGLKMAIEKVMKDMNVYLARKNKEASDKLKL
Ga0310143_01612_3007_3387	F019102	N/A	MSISLEEELNSAFISPHREFMGDKLAPYTEGSRLLLLQVRDDNDSSFYFIWSFVFIHILLNRSKKEAIKLAWNRDLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA
Ga0310143_01612_3384_3758	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEAGTAEEARAEMERTWAEMKSDPESPIRYVRAALENRETFLGLLKRAVPVRVIQRGGQTLLISENATSEQRRAILKHL
Ga0310143_01612_3794_4141	F006138	GAGG	MPAVTIGTTGLSFGLVAEAGIGLVQSFSEARNVEKNEVRNNAGDIVAVGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS
Ga0310143_01612_4602_4730	F014487	N/A	MPLLLITLLLCSCSPKKHTENNALPDYGEMGAASDAGKVKSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310143_01612

Overview

Ecosystem & Geography

Associated Families

Sequences