Scaffold Ga0310143_00952

Overview

Basic Information

• Taxon OID: 3300034523
• Scaffold ID: Ga0310143_00952
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11427
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001515	Metagenome / Metatranscriptome	679	Y
F026858	Metagenome / Metatranscriptome	196	Y
F041080	Metagenome / Metatranscriptome	160	Y
F091587	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_00952_3466_3768	F091587	GAGG	MSYNPYGGGSGSIVVTPSKPIVTARRLGSPNARLTDTKHGKAVRRTRPRHAVTTNRPKVERVLPTLTEQEQERLARALALSEREREFRATLPSVHIDAND
Ga0310143_00952_4013_4201	F026858	GAGG	MTHDNLLLNLTQREVEVIRMALRVQEDTHKRNDFPSLLLEVQDLRSKIADMIIDNARELTKA
Ga0310143_00952_6390_6653	F041080	GAGG	MSASTILGLADELRIIADEISYNALDTSSDYPKRGTIVKALASQTRFKPKSMWVSLGNGAYKHLTGSKGLVTTHDRLEGYVEVVFEA
Ga0310143_00952_9583_9993	F001515	N/A	MTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEESTLIVPTDALRYAVKEFGREITCNIPPNISKGYLITVDDLMSATRLYKKAKADELATN