Scaffold Ga0310143_00805

Overview

Basic Information

• Taxon OID: 3300034523
• Scaffold ID: Ga0310143_00805
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13480
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003643	Metagenome / Metatranscriptome	475	N
F010085	Metagenome / Metatranscriptome	308	Y
F043932	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_00805_11461_11670	F010085	GGAG	MKIQYVSKYLALAEEGLVERINCPLDQGPLSVNQTHDDTIYLYCLSCEYKNNIGLLLYDKLKKLVDNVL
Ga0310143_00805_6141_6515	F043932	AGGA	MAKFKSLLNLVTLQADPNSGSAGDVYFNTVSKNLKIHNGLSWVDLTPGSSDPAPFYMHTHTYDGDVHTITIDNMVTFDDDINNIASTEEQIPAIIGFDGGSPNSIYDNVSYKELTLLDGGEIGN
Ga0310143_00805_8475_8702	F003643	AGGAGG	MNQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAAVLPVILKALNTNEPAFGFTKKQ