Scaffold Ga0310143_00736

Overview

Basic Information

• Taxon OID: 3300034523
• Scaffold ID: Ga0310143_00736
• Source Dataset Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14896
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_00736_391_669	F000473	GGA	MWTGEPKKPVFYNDEMKKKLREIKRPHMLLMDVAMYPDFLALRLYEDNFLQFSGTKKEEVIDYVTKVKKMIESYGVRCELEGVPSDRTIGKT
Ga0310143_00736_6760_6891	F001280	GGA	MVGSETGISQINGGILDVSRDGEAGLTLNMTASREQRERFINE
Ga0310143_00736_817_1053	F000671	GAGG	MEKILCYSCNKSKANLNLVKSTLLGINLFLCESCKSEKLEPRWVVIIAGRQNGPESVKEFIAKKRYNGNEIAASELLI