Scaffold Ga0310143

Basic Information
Taxon OID	3300034523 Open in IMG/M
Scaffold ID	Ga0310143_00572 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034523 Open in IMG/M

Scaffold ID

Ga0310143_00572 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18431
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (47.83%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

18431

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (47.83%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.812	Long. (^o)	-98.262	Alt. (m)	Depth (m)	2943
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.812

Long. (^o)

-98.262

Alt. (m)

Depth (m)

2943

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F030060	Metagenome	186	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_00572_1607_1924	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQSVTGLGSNSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0310143_00572_1941_2615	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPEPYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDDIKIQGLNTYTAKSLEQMAKAIRGATDFWAINSTPIILASATRRDKQTSFFPQKDEWETDNIFSFEGMITMD
Ga0310143_00572_3366_3878	F030060	N/A	MTKGIITSESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEGNGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWFDSIGFECYRHDSISFCAEISVIYGRLKC
Ga0310143_00572_703_1194	F009142	N/A	MTNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQSNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRFLDFSEQRNSMYVAVI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310143_00572

Overview

Ecosystem & Geography

Associated Families

Sequences