NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372963_03961

Scaffold Ga0372963_03961


Overview

Basic Information
Taxon OID3300034449 Open in IMG/M
Scaffold IDGa0372963_03961 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_2000_MSt2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1536
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093431Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0372963_03961_931_1536F093431N/AFYQNARWQVTGSQVERLRSVGAGVYQWIVETQLVLRRGSLTQTFNEDIVWYITQDRETRQVSVIGYGDMPDSPRRDAELPYQPILPGVIHQNSNFSTTITFEDESQHTKSWQIGGWEDVSTYAGSVGCYRIREEGSWSRPLPFTEATVAATAWFSPQLMNYARIETRESGWIGANPVEYTLTYLLRRTNVPLRPPTGVQAQ

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