Scaffold Ga0370540_01440

Overview

Basic Information

• Taxon OID: 3300034448
• Scaffold ID: Ga0370540_01440
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013869	Metagenome / Metatranscriptome	267	Y
F016640	Metagenome / Metatranscriptome	245	Y
F025222	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370540_01440_15_326	F016640	N/A	MMSFIFIVVVIAGAGWLAWRRWTYWRTPIRPQPSAGISPQTRAFEAFTHGNSCLAAGQWADATAAFEQARTLDPKRPYVAERLAEVARRQHAASAPVPVAAGG
Ga0370540_01440_399_590	F013869	GGAGG	MTIANVLAVYKTAPIVLVVESAEGAVCELSLTDLHGAGHRLSDDACTSLVEEYRLFTCQLVAG
Ga0370540_01440_702_1019	F025222	AGGAGG	MIAFDAMEPAQMAFLYELYTRSAGDARQGVPYEALIDALGFDERVTKRIQCALERAGLVDLTTVPPMTHIGRPVMDHTPRHRRQQTIGMTPHGRRLMEDIFATRAD