Scaffold Ga0370540_01425

Overview

Basic Information

• Taxon OID: 3300034448
• Scaffold ID: Ga0370540_01425
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1023
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000329	Metagenome / Metatranscriptome	1287	Y
F004984	Metagenome / Metatranscriptome	416	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370540_01425_252_665	F004984	AGCAGG	MSPTAEQIDNATATFTECSRLVHSGRVQAGIQSLMRRWRAIPAVLQTRFLHTEFLTLPADTQAGITDLLRVRSREAGIAERTAALRHQMRADREQTVRLDAVAAGLTAAYRTRWHRLGGLAALGALAALLTLLSSTF
Ga0370540_01425_724_1023	F000329	GGAG	MESKAMVAVQKSWPVSGASLPVGEPVTLVIEEERFFGWVAAEAHAPSLVCVAIEFTRDGTRVQERIPVENIQRLRDYLQAHPELRQAKEQGACTMPSPAT