Scaffold Ga0370540_00198

Overview

Basic Information

• Taxon OID: 3300034448
• Scaffold ID: Ga0370540_00198
• Source Dataset Name: Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001127	Metagenome / Metatranscriptome	769	Y
F054656	Metagenome / Metatranscriptome	139	N
F058276	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370540_00198_189_398	F001127	AGGAG	METYVEQYQAKDGGVTLHTWTQVQGEKKENFYITGVSGTPVASWFREVLRTKHLADIADFPYTPSRFYA
Ga0370540_00198_548_892	F058276	N/A	MHRHTLLEGKETSMSNVMIEKGGQFRALQAQYAAFIAEQDVVTDHVISTATTARLEALDLELFRWEDVHKDEIKAFGGIDTFTPPTGPGVLPATGIEPAAGALRWAGASARNPC
Ga0370540_00198_938_1306	F054656	AGGAGG	MMPTGQEQLFEDFVHFAATHGSGAVYHRDLHQSVPPGCVFVRFRAPGEESFTFAGIVQFRQREEGFTVCKTFVASRDQPLELRMNFPREIPQNFPSPTFAEAHQVAQSRWRRWQRALGSWWH