Scaffold Ga0348337

Basic Information
Taxon OID	3300034418 Open in IMG/M
Scaffold ID	Ga0348337_027568 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2686
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

2686

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.149325	Long. (^o)	-75.288339	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.149325

Long. (^o)

-75.288339

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F016900	Metagenome	244	Y
F037478	Metagenome	168	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0348337_027568_1123_2685	F037478	AGCAGG	MATLKEIQDAINNKTFDPNKLDRKQRSLVDEAIRRGLITGPSVGEIEMQRSQAARDVATMEAAEKNPIGVYLKQQDSMLDGRSEAVLAGDLIGSITPYVTMRKKIFSAAKSKVPGDKYTGLFARTKMFSNLADKMTTRLPGRFKLLGGALKLIARAADPTVGRIVASPLGRAEIYSVLGGSAGAGAGSITYDMLNETAGTLVMDSIAEDMKDMPPREVNTNMLANAADATFTALAWNAGAATLTPIITKGLGKIGRAAIGAKSKNAKELVGIARDKGLPLPLVMTAQEGTGLLGGFANKFFKVVGIMPFINGIGKEALQGAEQKAGREYLNTSVLNYGPLIKTGMLSATVWKQAEQAFIENSNLINASYKGFEALANTIKNPKVIPTTHVRKMAAEYVDELAMQYPGIRAYAEDKLGPINLKELEKLRGTGDPLATFFRYANQLEDTITPLQYKGLMETMNNAISSTTYQNIRPTLWSIREALENDLNSFGGAITKETFMKDAAFKEAYDNLTKTAGKAAA
Ga0348337_027568_2_1123	F016900	N/A	PAVNNYVTVKLKEGELRQNAREASLNAALDHMKFVNDNAKKERPEQTGGIVQIRGADGRLRNYKAYQMKDGTITMAAGVGADGREIFTTIPQGEAIIDSDGNTIGNFENFLKQDSIDKRLFDIQDTLGNRYNAYSVTRDVLQTLGQMDEAGEQVKAGAGLSIDQFTRRMSGVAKEILGFDVTGMSKDELDARVKALQQDEYDAIDRDPDLTDNQKKAQKKLLNSESLIDAAKKRILRNSGSKGWFSGLSGADQEKLAVQEVTLVYALANTFKDQDRLTQRDIDAAQKIVNIFSLTRSSKDVRDSIEAISKQLESDIRRQEGLYTQAGGLETTLRDLRKLKEAQVFESTGGVAQELMGDLGIEEIEQGLAGVEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0348337_027568

Overview

Ecosystem & Geography

Associated Families

Sequences