Scaffold Ga0374090_04849

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0374090_04849

Scaffold Ga0374090_04849

Overview

Basic Information
Taxon OID	3300034404 Open in IMG/M
Scaffold ID	Ga0374090_04849 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2266
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.69934	Long. (^o)	-110.76721	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013613	Metagenome / Metatranscriptome	269	Y
F077496	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_04849_1472_1978	F013613	GGAGG	MPRPRKYPDGGVVISTYVPYELYEKVKELARSKGKNISEIAYELIKRGLEASGASAADPPDPPEDALHVALKGLEPLEREKVLQFMKGLEDAEAKLAKLGPNVRQARAGRPTLLDVVNQQEVVKLRGTVVDLKRTYERSIKRIVRDPATLNIIGERLLRLMKELGVPP
Ga0374090_04849_1953_2189	F077496	GGTGG	LSAPQEEVGARLGRRKKWSGDAVIMTIYIPLDLKKELEARAAARRKSLSEYAVSLILKGLDAEKETEANKDAKAEEVP

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.