Scaffold Ga0374090_03367

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0374090_03367

Scaffold Ga0374090_03367

Overview

Basic Information
Taxon OID	3300034404 Open in IMG/M
Scaffold ID	Ga0374090_03367 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3355
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.69934	Long. (^o)	-110.76721	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028973	Metagenome	190	Y
F063429	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_03367_1084_1734	F063429	GAGG	VGKVIDPSVREELAGKRIWDTDMSEEQIKIAEQIESAFIDSFKQDVESGIVPWADANNIIDYMDYMAQEGLDSEDLIEYLAKRSGIGLDAFKQMWAKLTDEQKVDVLNSIAHKIAYRGLEELLKTIVDDLSRQRKYRKGRGRVLVAALDYAFKVKRADYDWLEGVIISVFWPEKKKKDEMAYEDFIRGLDLANYLDEEDLEELIVEHLVYGLAEKC
Ga0374090_03367_2458_2778	F028973	AGG	MAQVTEEEEKRAQETVDEIVRELEEHHVNGDWDKFFDDEVLDVLLLTTPDKEDVLGFSILLGYGGPTVEFICDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS

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