NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0374090_03367

Scaffold Ga0374090_03367


Overview

Basic Information
Taxon OID3300034404 Open in IMG/M
Scaffold IDGa0374090_03367 Open in IMG/M
Source Dataset NameHot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3355
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.69934Long. (o)-110.76721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028973Metagenome190Y
F063429Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0374090_03367_1084_1734F063429GAGGVGKVIDPSVREELAGKRIWDTDMSEEQIKIAEQIESAFIDSFKQDVESGIVPWADANNIIDYMDYMAQEGLDSEDLIEYLAKRSGIGLDAFKQMWAKLTDEQKVDVLNSIAHKIAYRGLEELLKTIVDDLSRQRKYRKGRGRVLVAALDYAFKVKRADYDWLEGVIISVFWPEKKKKDEMAYEDFIRGLDLANYLDEEDLEELIVEHLVYGLAEKC
Ga0374090_03367_2458_2778F028973AGGMAQVTEEEEKRAQETVDEIVRELEEHHVNGDWDKFFDDEVLDVLLLTTPDKEDVLGFSILLGYGGPTVEFICDRGDGKIIYSYGDVEVKKDVDPDICDDVINYLDS

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