NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0374090_01928

Scaffold Ga0374090_01928


Overview

Basic Information
Taxon OID3300034404 Open in IMG/M
Scaffold IDGa0374090_01928 Open in IMG/M
Source Dataset NameHot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5510
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP30(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.69934Long. (o)-110.76721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0374090_01928_17_349F051572N/AVRTFADIVLEGGCKKSLQFLNAYFDLCVLAVLIKATPAGPMVRLRPEIVRRLVEEVAAAVGGGGHERIRNAMLKRAGEMMARLRRELGDSAPSEAYVAKLAELFLKKLEA
Ga0374090_01928_405_989F038745N/AMDKAVMAVCGKLMQISLTFSAYYPLCLDGPSCAYAEAVELLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGLGRRRRVDGRDVFLALCFWAQKKHREDPWNPLWRAAELKPDRLYTEEEARKALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV

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