Scaffold Ga0374090_01333

Overview

Basic Information

• Taxon OID: 3300034404
• Scaffold ID: Ga0374090_01333
• Source Dataset Name: Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7294
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.69934
  • Long. (^o): -110.76721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F099548	Metagenome	103	Y
F101501	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_01333_4948_5295	F099548	AGG	MQSNLPWNVRRVVARLIVIAIKGAPGSCISITPGLLGKVLGDGAVREALRLLRVMSLHGILDRVNGAYTLCSMDNPELWVTVKRLPIDEAVAWLLWLIEDASDGKAIGNGPSYEL
Ga0374090_01333_5982_6452	F101501	N/A	MRGMLNMERIVRENVDVIRSIVKRAFNGEYMGYTNDAIPFIIIKVKDGVIEVPITNTAFKPILEKAYKTLDNYEKRRLLAYEVGGAFKVHPYYIQLLILDAIQLSQLLNIRNADALVRTLLEHPLSSERAGMIGRQGVEWLIKRMIEVGLLNMPSP