Scaffold Ga0374090_00821

Overview

Basic Information

• Taxon OID: 3300034404
• Scaffold ID: Ga0374090_00821
• Source Dataset Name: Hot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10000
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.69934
  • Long. (^o): -110.76721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F087443	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0374090_00821_1_381	F062912	N/A	MDPLEILEKAYNLFLVSDIIENESDIDKELEGLLEDRDYENMAKTMIYALIYTLNNDPAYRNIRQIYINEAVDLLYIIDRVGFNDEKIMKKFINFLYQFYSYSLQYKIKLIADKEKRELVKAKLVEL
Ga0374090_00821_4211_4627	F099549	N/A	MDTNLQYSYQIPDLKTMFLIDFGNIIREIVSLLTYSDIFTDTETFDSEELKNKLRAAIAYALGLLASTWGYSLSEKTQRDVLIAKESLKALFSRIVTDPEITYSDLLDIYFELIQKVSIILNYGTPIPQPRTGNYDIT
Ga0374090_00821_482_691	F087443	N/A	MGQRKNYWMTFGDSDNVDYIDKEITKIGVDLDLDPSEIRAWIFKAFVYDPEVRAKVIEYIKKNGQGTNQ
Ga0374090_00821_5590_6099	F097670	N/A	MNYKVFDKDMYFETNRIIIINLKTNEINHEEKIYFYDGKELKQLKDFYEYNLKQYEIAQKIQEEFTKFSTKHAKPPIGYITIGNIIFEYMLNRNNVILIAFANISKIEDEISKEIANDTIRIIYKSKMIFNKEWNFESTLNLSPEIKDNVTKIIEKALKSAKAILKNNL
Ga0374090_00821_669_875	F077497	N/A	MDKEQINKIEEIIERHLFGETNNSDCELKKRDVIIKYLIYQQLKELNEKLNSIDENLYELANPGIYKM
Ga0374090_00821_8062_8559	F090626	N/A	MPRIFKFENIYFGRNSLVKLFANKTHLQNSTDYDGTTLAFLLDVSDFTNTNALLSHFAIINGNEIRPILVEWNLRTIHGRLMILLNQLSGPHDTKMLLKRFESIIERDQRPEVVKYIAGQYAKALSDAKGLQPIYSFLVQRIYLLKLNGIKKGLEEVKRLAEIYG