NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0374090_00280

Scaffold Ga0374090_00280


Overview

Basic Information
Taxon OID3300034404 Open in IMG/M
Scaffold IDGa0374090_00280 Open in IMG/M
Source Dataset NameHot spring sediment microbial community from Evening Primrose, Yellowstone National Park, WY, USA - EP_sed
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19297
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (44.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Sediment → Evening Primrose Hot Spring Microbial Community

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.69934Long. (o)-110.76721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076261Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0374090_00280_6383_6790F076261N/AMIGSIAFQLGNATGSSQIVSSALSYFDPFFTAIMLALGVAFWASLLFLIYYGIEAFAHPTPFGRSARLASMYDHVKSIIWSIIAIYLVVAIIAFAVNQASAAAGAGTTVNAGQLFYYIFVEPIVNGFKLFFGATK

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