Scaffold Ga0325419_027318

Overview

Basic Information

• Taxon OID: 3300034389
• Scaffold ID: Ga0325419_027318
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4702
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008225	Metagenome	336	Y
F012319	Metagenome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_027318_1222_1476	F012319	N/A	LTKAESLQTHKSSAEHSSTAEAEIVRPHRLLQNQKSLTKTDSLQTHKSSPQYSSAAEAEIFMAQRLQQNQKSLEKTDLLQTQKS
Ga0325419_027318_1445_2020	F008225	GAG	MCVCSDSAFVNDFWFCSSLWGLKISASAVELCSDEDLGVCSESVFVNDFWFCSSLWGLKISVSAVEPGSCHDFWDGSESVFVNDLWFCSCLCAMKISASAAELCSGEDLWVCSELVFLNDFWFCSSLCAMKISASAVELCSGEDLRVCSESVFVNYFWFCNSLYGLRISACAVELCSGKDLWVWNESFFVN
Ga0325419_027318_208_849	F008225	AGTAG	MWLKISGSSVEPGSREDFRVCSESVFVNDFWFCSSLWGLKISASAVEPCSCHDFCVWNESVFVNDFWFCCSLCAMKISASAAELCSGEDLWVCNESVFVYDFWFCSTLCAMKISASASELYFVEDLWVCSESVFVNDFWFCSSLWGLKISASAVELCSVEDLGLCIESVFVNDFWFCSSLWPEDFSFSHRTLLWWGFVGVQRISFRQWFLILQ
Ga0325419_027318_3463_3741	F012319	N/A	LTETDSLQTRKSSPEHSSTVEAEIFMAQRLLQNQKSLTKTDSLQTHKSSPEHSSAAEAEIFVAQRLLQNQKSLPKTDSLQTHKSSPIHNSMA