Scaffold Ga0325419_025478

Overview

Basic Information

• Taxon OID: 3300034389
• Scaffold ID: Ga0325419_025478
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5009
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011092	Metagenome	295	Y
F026451	Metagenome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_025478_106_321	F026451	N/A	MRPFVRKAWSFLRILRWAGHLIVRLFLRKAWSFQRILRWAGHQILRSFLRKAWSFLKNFERGRLLDIETVS
Ga0325419_025478_1561_1776	F026451	N/A	MKPFLRKAWSFLRILRWVGHLIFSLFLRKVWSFLRILRWAGHPILRSFFRKAWSFLKNFKRGRLADIETVS
Ga0325419_025478_1917_2114	F011092	GAGG	MILKPFLRKAWSFRRILRWASNLILRPFLKKEWSFLRILSWAGHPILRSFLRKAWSFLKNFERGR
Ga0325419_025478_2425_2640	F026451	N/A	MRPFLRKAWSFLRFLRWAGHLILRPFFRKAWSFLRILRWAGHPILRPFHRKAWSFLKNFKRGRLPDIETVS
Ga0325419_025478_4496_4696	F011092	N/A	MGQNLILRPFLRKAWSFLIILRWAGHLIFRPFLRKAWSFLRILRWAGHLIFRPYLRKAWSFLRILR