Scaffold Ga0325419_022426

Overview

Basic Information

• Taxon OID: 3300034389
• Scaffold ID: Ga0325419_022426
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5577
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F016904	Metagenome	243	Y
F088134	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_022426_2343_2564	F016904	N/A	MLLIKPKDTRFHKRRLKSNLSFLRLSLVDQCMRLMEGSMIGMKDCSWSINCSKVAPEIMNYRAEDVRNLCSTV
Ga0325419_022426_3274_3519	F002798	N/A	MVSVNREDKIQFIKDDLSKGSLDNLLLTLETHPNRDVHRAIHDLWPQFHKEHARHSFGNLTKKDPVCQFLRKLDGKPILDQ
Ga0325419_022426_556_864	F088134	N/A	MNKKLRNRLTMFMNSGRPKSAVFKFKVWPQKRNQNLFCDPAQTLLSILPIAEVLEGKMTSNLVGGRIRQFPTTFMKTTCSNSDASNDISSRQELKGYPLRPP