Scaffold Ga0325419_005839

Overview

Basic Information

• Taxon OID: 3300034389
• Scaffold ID: Ga0325419_005839
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13485
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003381	Metagenome	490	Y
F005804	Metagenome	389	Y
F010370	Metagenome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_005839_11852_12070	F003381	AGGA	MDQPRNTNKDPLHVPNGPMTRSKTKALKEALNALVLNVSTKSELKGLLEYQEETLVHLIHVQEGSNRTLFGS
Ga0325419_005839_6154_6348	F005804	N/A	LEVAIEPITRARAKKLKEALNGLVQNILSKMDLEGLGIFKEHEEKPLIHLVQVQKEPNSCGTRG
Ga0325419_005839_7644_7790	F010370	N/A	MQNHDTTPKYVGYDENELQEMKTTESKRISKVDAKQTRLLRVKSAFGT