Scaffold Ga0325419_001564

Overview

Basic Information

• Taxon OID: 3300034389
• Scaffold ID: Ga0325419_001564
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25774
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (32.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F015553	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325419_001564_4349_4717	F015553	AGGAG	MRERYGDDPSTHPDFNPDLWMEVGSSDRPEKNQVYGLSNTTAENLQSARSVSTVGSSPSVSSTQSEEFMALKQQYERLSTNYDQLRQMVMEIRSRMGDVTCAAPFWLYGPENNQPPPAPPLF
Ga0325419_001564_644_853	F000510	N/A	MQFGGVWKLSRLKQKKTKNYQTKFNKIRKLSREQTLVTSTHPLTEIRTDHGNETSIYILNIYLFLTLVN