Scaffold Ga0334923_000886

Overview

Basic Information

• Taxon OID: 3300034376
• Scaffold ID: Ga0334923_000886
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 19HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4900
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007252	Metagenome / Metatranscriptome	354	Y
F017778	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334923_000886_1519_1977	F017778	N/A	MAKGKTKGKRGGTRPGAGNPYKWKHRETKPVRLPIALIPKILEIAQLIDGQEYIDRVEHEFDDEEGKPKYYNGYYAAELSYLRIGNDALASEVNNLRAENEALKAQLMELNNGVLPEPLPDFSNLLFVREPKPLAKQDRRKKRKAIFVEKQV
Ga0334923_000886_3631_4071	F007252	AGTAG	MNNKVHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPSAPAVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAAFDIFDVPPPQKARSSSR