Scaffold Ga0348336_035663

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_035663
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2258
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F006008	Metagenome / Metatranscriptome	384	Y
F097383	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_035663_1088_1396	F097383	N/A	MSIIFAFWASMACNLAVFGMFAYVCMRVARFQKSLKGLDWQAVADITGDIGAVKRSIQRLNNRLNGLEKTSSTPDALAELALLHQQQQANVTPIQQNRATGG
Ga0348336_035663_2105_2257	F006008	AGGA	MPLVKKNITVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTGTYSGNVTM
Ga0348336_035663_79_333	F000754	N/A	VAAAESTGTYSGNVTMNFKVNNTEFSSDVAVSEKVTGEAFGWNNTGYVLNDMITTGAERNRPVVTFTNGDAASVDVEVAIFIGG