Scaffold Ga0348336_035194

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_035194
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2283
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005579	Metagenome	396	N
F099206	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_035194_1_573	F099206	N/A	MALSASHQVSGTHQPAYNDNLWVVDESSTAITSNFNFKFICDIKNGSGTLLNRLKAPIHYSSSDEGVFNISRILGDYVTYDWDYNDTAASGCSNSVFDYILDFGYEYSTGATTPIVQTTGVTQVTGNTVWNGSLHPLDFLDYDEADYMMGTGSSANFLTSLTSKRIHENQKDWLFALHDSSIDHLSVAFSG
Ga0348336_035194_783_1343	F005579	AGGA	MLKWKDITIGMLQEIGELPDDLNPIEKTAHTVAIIKRLPYEEVEKWTLNDLRKIDLSFLEEEPKHRLKWTFKHKGRRFKLVKNAKAMEAHHFIELQELGDSDKIEALHKIIACLSYRVNIFGRKIEDDYQWKVDNFKDLPAPQFYKYSLFFSALYPKLLKTTLTYLKAEVKKAKEMFSDGSDSLTD