Scaffold Ga0348336_029397

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_029397
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2622
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F064230	Metagenome	129	Y
F084080	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_029397_1404_1649	F017135	GAGG	MIPIINCPLPGGGQALIKTQDIGGATSGKNPKECDVYVIGWAANGITVDLSLDDFAEIWVSALFDEGSNDIEIIFTPDEVH
Ga0348336_029397_1609_1800	F064230	GAGG	MTLKSYLPQMKCTECFKIMVPQFKKEYPHKLEGWSCDCGNSEKAILRERQYTREDNDSQARVV
Ga0348336_029397_1919_2158	F084080	GAG	MSNATALCHACHRYFTSNPIAFHDWLNVELGEAHMDKLRQDRNEIYKTNKLLRKDIGDHYRDEVRRKEIDPDYEIQSWN