Scaffold Ga0348336_022764

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_022764
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3174
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003647	Metagenome / Metatranscriptome	475	Y
F037813	Metagenome / Metatranscriptome	167	Y
F094605	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_022764_2764_2976	F037813	N/A	MKQSNLYEMLKPEYKTSIATKYANRQHSHAALIRALSEEFYFTEIKYGDAFDIMNTCELDFLGDAFNKAY
Ga0348336_022764_2982_3173	F003647	N/A	MCEWTLADVKNRASNKAFAKQTILKLDIEDYKRSLINGTYGGITYEEAEQVLEGYKTELKVWNY
Ga0348336_022764_368_565	F094605	N/A	MTLQELTTFDRVFQSYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK