Basic Information | |
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Taxon OID | 3300034375 Open in IMG/M |
Scaffold ID | Ga0348336_008792 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6355 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.130153 | Long. (o) | -75.249887 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007167 | Metagenome / Metatranscriptome | 356 | N |
F032641 | Metagenome / Metatranscriptome | 179 | N |
F042805 | Metagenome / Metatranscriptome | 157 | N |
F046347 | Metagenome / Metatranscriptome | 151 | N |
F078652 | Metagenome / Metatranscriptome | 116 | N |
Protein ID | Family | RBS | Sequence |
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Ga0348336_008792_3456_3911 | F032641 | N/A | MAGLANLGVATAFGALMVSMEQTCGAFIVEAQRQRLDVMRALRSGGEAPELEINDNQMALLQAGRAFALVCLFGIFFMVTTSPLVSKKRIFPMKSFTYLLAGLASLAFALQMYLMRSIKKGITSAERTMRFSLAVIYMIFMAVSLFVMVNY |
Ga0348336_008792_4173_4415 | F046347 | N/A | MGELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDIDKFKGLEGVGRSTLELFKEFVTTGEMKRLKDLKDED |
Ga0348336_008792_4399_5007 | F042805 | AGG | MKVTFPGWLGWVEEMPEDEDNEEKVSMIEKCFMEITDVYAEKLLWPSIYMDEENGYDSEDNLERIWYYSDAQSYLEEYLEENGYNRDYYHIMHVEATFHEPGEEPREVKFYVKEITCEIEHPGGNCSYEMFKWWVCEELYGDFDEYGLDVPEENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRLADEDGRTG |
Ga0348336_008792_5043_5648 | F007167 | N/A | MEVKDAIFGFYLSPSSAVYIPKEGVETKKMKDGTIIKVPKHMYHPLTIEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPEKLREALSIIQRRIRQMFETPVQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKAELFNVISNLLEDKDKIPYVSRMLMDRFR |
Ga0348336_008792_5620_6354 | F078652 | N/A | YGAKFCSPREAAEKFWKRNRPDAFKEYVKNHGTPDWKKKDDFVYGNANAKQIMEEARKVKTENTGDIGGVLKSVSDDKRAATFTAEQKQFLEEATRTKVFQNHGTRKEGSTLDQWCRETGKNAFKPMDRYTLQIHPNVVVVGLIDGRTEDNELVEFKNRAGGRLFNEVRSYEMAQCQAYLRMVDLERGFLVECLRREGQDPKLNTIPFTRDDEFWEDTVERVLSNIFDPRFECFRVTESGPSAS |
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