Scaffold Ga0348336

Basic Information
Taxon OID	3300034375 Open in IMG/M
Scaffold ID	Ga0348336_008792 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6355
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6355

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.130153	Long. (^o)	-75.249887	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.130153

Long. (^o)

-75.249887

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007167	Metagenome / Metatranscriptome	356	N
F032641	Metagenome / Metatranscriptome	179	N
F042805	Metagenome / Metatranscriptome	157	N
F046347	Metagenome / Metatranscriptome	151	N
F078652	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_008792_3456_3911	F032641	N/A	MAGLANLGVATAFGALMVSMEQTCGAFIVEAQRQRLDVMRALRSGGEAPELEINDNQMALLQAGRAFALVCLFGIFFMVTTSPLVSKKRIFPMKSFTYLLAGLASLAFALQMYLMRSIKKGITSAERTMRFSLAVIYMIFMAVSLFVMVNY
Ga0348336_008792_4173_4415	F046347	N/A	MGELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDIDKFKGLEGVGRSTLELFKEFVTTGEMKRLKDLKDED
Ga0348336_008792_4399_5007	F042805	AGG	MKVTFPGWLGWVEEMPEDEDNEEKVSMIEKCFMEITDVYAEKLLWPSIYMDEENGYDSEDNLERIWYYSDAQSYLEEYLEENGYNRDYYHIMHVEATFHEPGEEPREVKFYVKEITCEIEHPGGNCSYEMFKWWVCEELYGDFDEYGLDVPEENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRLADEDGRTG
Ga0348336_008792_5043_5648	F007167	N/A	MEVKDAIFGFYLSPSSAVYIPKEGVETKKMKDGTIIKVPKHMYHPLTIEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPEKLREALSIIQRRIRQMFETPVQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKAELFNVISNLLEDKDKIPYVSRMLMDRFR
Ga0348336_008792_5620_6354	F078652	N/A	YGAKFCSPREAAEKFWKRNRPDAFKEYVKNHGTPDWKKKDDFVYGNANAKQIMEEARKVKTENTGDIGGVLKSVSDDKRAATFTAEQKQFLEEATRTKVFQNHGTRKEGSTLDQWCRETGKNAFKPMDRYTLQIHPNVVVVGLIDGRTEDNELVEFKNRAGGRLFNEVRSYEMAQCQAYLRMVDLERGFLVECLRREGQDPKLNTIPFTRDDEFWEDTVERVLSNIFDPRFECFRVTESGPSAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0348336_008792

Overview

Ecosystem & Geography

Associated Families

Sequences