Scaffold Ga0348336_007011

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_007011
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7450
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018105	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_007011_2065_3054	F018105	AGG	MSGYTLDTPYSNQVIFMNSQNSIFKSINGNGEYTYSFATPIQLPNNCDMLISITDAQLPNVIPNITSSNNQISFYLPTFSKYFTITIQDSNGDVDKVYSVTEWIAFVNAKIVIEASSQFNLYAEYQTTNSKIRWLCNFPFSIINTSSYPTSCIDLLGFTKSSDNSVVYHDEVSGILLSSNVNPSYHIQMPSIVNFAGTRFIFVKFKNLSVNNLNSGGNTDNAMVRIPNNAPFGYYIFYRPSEVQRFISRKRNINSLSFRLTDSQDNDINIWSSDAQITLKIEYLYKPDMRSHEEGTINYELRKLGEIPKLTTSEFEGAYNPQTSSWIRE