Scaffold Ga0348336_003742

Overview

Basic Information

• Taxon OID: 3300034375
• Scaffold ID: Ga0348336_003742
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11384
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F027854	Metagenome / Metatranscriptome	193	N
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348336_003742_6985_7269	F003677	AGG	MVDEALYFFEKDVGKKVYEMEYEITYATKWQILAEDKDQAFKIWLENHKVDIATQDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES
Ga0348336_003742_7405_7635	F085570	N/A	MDKLMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLVSEECIDSKSLINLLSDLDTAWHNHYSKNIKVEVTFEPHEGE
Ga0348336_003742_8142_8381	F027854	AGG	MTDQEAMKLHELIDELRAKLKKSLKEVLQLRKDLDLEREEHQLTQLRYENVKNAINKEVDRLNQRRPDVEIPADEKGVK