Scaffold Ga0348335_055133

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_055133
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1500
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053970	Metagenome	140	N
F078759	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_055133_56_310	F078759	N/A	MDKIEILLFINEHLDQLQLMATRKFSGRLTKNEVKDYEETYKAIHGNARVCFTCGSSAQTMARVMLKFAEENKPTPKPKRRRRK
Ga0348335_055133_865_1446	F053970	AGG	MMTCLSKHQAVIDLLADDELRELAIRICHRYADDLIQEVAMVILEMDDDKWTNVNDGGYLRYYIVRTMMTMATSPRSTFSRKHGLFAHSTEMSDVADDAEGYDWDQEDDMMIIEALLDSYHWYDKEVLRLWLQEGSYRKVGKKVDIPFKSIGNSVRRTLDQLKEDYYGIILQRCISSGHRVTTDRSDKHPDIH