Scaffold Ga0348335_027107

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_027107
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2601
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F074734	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_027107_2138_2341	F009459	GGA	MSREITLEASVMIEELMFYIHQNEMSGDAIDPANRFFPLYLELQKLLDHEQQKKYDLYVSVKNDETK
Ga0348335_027107_2341_2595	F022875	N/A	MKLNLTEEIKENIRVRAKAHINSTDPSTDYWDSIETPDGFVDFNIWQDDDYRGGEWIVTCYDTYCSTDDGCVHTDTSTFKRIAL
Ga0348335_027107_3_569	F074734	AGAAG	VNAIEAEMKRWGRATYRQFQQFYKESERGSELDSSKRVLSKLAPQLADPIEDFFNRFVSDDSPSMPIWLCYIADFHPQMVAQIALKTVLDKMYAETRHFSRLAAEVGKAFEEVARQRVAEHTVAKNKMFSVQKTKSKRSKMQRFYNVEKNNRRFTCWEKRLKVSLGAWLLGEIERHTGLIEFRMERFGK