Scaffold Ga0348335_023961

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_023961
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2846
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011269	Metagenome	293	Y
F043150	Metagenome / Metatranscriptome	157	N
F100030	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_023961_1465_1686	F100030	AGAAG	MDMTKEELEFQIATERKFIEKQRAAQQRMRNLEAGVRSSNISADLAAFDMSVWKSEERIAEHEKKIEELENEN
Ga0348335_023961_1983_2366	F043150	N/A	MDNVDISLDNFRKAFERDPTQDEIAMMMKLKALKQERQINTSNTGNLMQRSKISQELAIARANKALKDKVKCTPRGIQINKMLNYGLTAEQIMDVLQLNEVQVSATIERFKLPRPVTDLVFHQKVRN
Ga0348335_023961_2654_2845	F011269	AGGAG	MEFFTAFYIEYAVRGMDIQSYILLPSYEACQVMIRDNEDMSEYMYADGDVNMWCIKTDKLSQSM