Scaffold Ga0348335_009735

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_009735
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5393
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034398	Metagenome / Metatranscriptome	175	N
F061813	Metagenome	131	N
F063185	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_009735_4123_4341	F063185	GAG	MADYYEEQEPKEFVIVQEVVVLKHYTVEAESMVDAIQQIEHGNYDCIVDEDEIGEEHHKKGRIISVRVNDDD
Ga0348335_009735_4804_5142	F034398	AGGAGG	MIAEQYRNIKPHFVHADHMPMVCRWSCILLDQDTENPPFEPARYFVVNVFAETKDAVLDCLGEEYPWCDIMYVDKALGGHTDDDFLESWLHYFDAKEAIPVREAPHGTNYDQ
Ga0348335_009735_5120_5329	F061813	GGAGG	MALTTTSNENKTRVDYLVYKQVTECSALLKQASEILNDTGDTESTTLDNAMSHLKCSVDMVNRFLEENA