Scaffold Ga0348335_006411

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_006411
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7085
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041744	Metagenome	159	N
F045720	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_006411_3718_4290	F041744	N/A	MRIDHTVTAVTPANIISRADFRTYARAVNITGEDDLIDRQLEASTRYVETYIGQSLNENRMQAILWDFDDDRDMDAGELRYVLPMGPVSSITSVVGQDLEGANTTLTADTDYYLLTGGRLRIPSPTAYSTYTVNYVAQLSYVTENVKEAIIKICAELYQNRGISVTGTIVSNLKADLNSLLAKERTKLFL
Ga0348335_006411_5227_5880	F045720	GGCGG	MGIELELCVGWSLPDDLTQVVNHYGYPYASVFAENDPLSYKQEAILNIMRGRFDYYLQIGSDDVFIEEADIYYEEALTRGVQYVGCRSVYFIEPSTQRAVSTAMTHTSVNSVFGAGRLWSAEAMDKVLENGPIWPKAMNNQLDLLSENQFKAAGVWMETFEEERPFIVDIKSETNIWKFKKYQNERAEDYREIVGRMDKGARAAVNLLHEVSAGANT