Scaffold Ga0348335

Basic Information
Taxon OID	3300034374 Open in IMG/M
Scaffold ID	Ga0348335_001640 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16204
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (62.96%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

16204

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (62.96%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.124826	Long. (^o)	-75.260873	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.124826

Long. (^o)

-75.260873

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_001640_10614_12158	F015724	GGAGG	VARKNGCDHFGWDSHQPKKSKFGFKSIEGATSARQLNSPVPFKRKFRPDFNLKDFSVLFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTQTSGTVYAVELSSNFGPPISFFTGEILSDRFASDGTEKTTYNNYVVIGVGNGTTPLEPSFAPVFNSIFISLDTDNSWSVINNETLQAPASLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRRYPYTPVEYLKPGLYDAGEDYLASRESNSRDFPGFTRDFGFLYVKKLLDLPFYRDGAKTYSDPNLIYFAPRWCKHIYASFWDMQNRFGSDMFPEAWLAQPTDEPMDDRYREQFEIDLLKQTTFDKRQKHLRWWEKYSPSQNTVPVHMMYPDMHPTMVKTLNFDTLASGTTTPMTASGFEMFTIEQYDPFAPPDPDITPKLDGGTYADGVLISGASLIYDGGQYANGVLIPYPSYPSLINGGTY
Ga0348335_001640_4614_4940	F039113	N/A	MDTNIREIKEILKALQSIDVSLQLLASSTGEHRRTTAFVSKKVITQRLNIPSVAIDKLIHQGIASRGASGLVEGKHYCKLDPSDNNSAKFLYDAQAIIDSAWESFKNV
Ga0348335_001640_8615_8848	F023840	GGA	VAKDHDQIKVGLTLEDDFTLTRIKNAAHSLKGEDRDQYLWKTIFRFVCRERAFKSVMEEIGVVIDTNIDIFEEVEDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0348335_001640

Overview

Ecosystem & Geography

Associated Families

Sequences