Scaffold Ga0348335_001291

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_001291
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18685
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (20.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036214	Metagenome	170	Y
F056571	Metagenome	137	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_001291_13061_13477	F056571	N/A	LRFPQLTRLVRVSSSPFSSFRFILSLLTFSANLARSTAAEINFRVDTIYGLLTEGQSRGQIQQFAANQWKNISVRQTDEYIQRARIRLEQDADMARPAWLAEALGRLRTYEQSAYKRGQTQVAINSIQLQAKLIGFDL
Ga0348335_001291_5393_5617	F036214	N/A	MDNEAWDWMIPKTDTSSAFNIEKEARRLENTPNAGPIAAQLYRAWNMQQTLLQQATNRIAALELQLMDRHQADA
Ga0348335_001291_5602_5940	F097251	N/A	MIILTDSQVVELNNRIGQIQRLLESAQVIKAGGAAQPKAVTESVETPSIVGKRRKAKRKRGALNEQKVAEIKARLATGNESARIIAEDYGVHVTTVNLIKYGKTWKNVQASA