Scaffold Ga0348335_000911

Overview

Basic Information

• Taxon OID: 3300034374
• Scaffold ID: Ga0348335_000911
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23253
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024923	Metagenome	204	N
F028551	Metagenome	191	Y
F077927	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0348335_000911_3_272	F024923	N/A	MNNQENKLVAKDWWLKPSLLPTKAWSYDKGVNGGYIADFDSIGRDIRLIGTEQQLLEWFRETGVEIKDSWKTELTEEHKKLYERNKKNIV
Ga0348335_000911_5428_5640	F077927	N/A	VVGVLKRLRIKEMTKYYNAETRNSLEMQFGGLVCKKIVIEKKYVYAKRIETRTKKYGNQRKHKGEMGKYN
Ga0348335_000911_6149_6505	F028551	N/A	MITYKWIISSMDCVIQETVEGQELQNVVNMVHWRRAASEGTKGQADYYYADVYGAMPLTSPNPNDFVLYENLTEADVEVWLNEMTQPSPAEMDEQLATNIELQKNPTEETLPLPWTNE