Scaffold Ga0335064_0027123

Overview

Basic Information

• Taxon OID: 3300034357
• Scaffold ID: Ga0335064_0027123
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3068
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048169	Metagenome	148	N
F056545	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335064_0027123_2116_2397	F056545	N/A	MVILLAAPHCALSQCIDSSTLSANNYYLLKGAEARENLALCIEYRKVDAEVIAQQDKIQAKLLDELQKRDQKYHRLRRTTYAIAAVFLVTLIL
Ga0335064_0027123_2324_2626	F048169	N/A	VSKSNLTILLLVLLVFGGMAYVEFAVPKRERVVHGPAIRIVEKDLDTLYQIRLKYKALHDTQIVINQKYDTLYIALNGDTSCGTTLRLIAMHRQLDTLGK