Scaffold Ga0335064_0004320

Overview

Basic Information

• Taxon OID: 3300034357
• Scaffold ID: Ga0335064_0004320
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7238
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F049410	Metagenome	146	N
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335064_0004320_1229_1420	F062749	N/A	MKTKPSLILWAISALFMSFWAIKFAMTGVFFGNSELLTFTLSFCASLTSAVCGAGFMQQWLKK
Ga0335064_0004320_1424_1591	F102493	N/A	METTLTLHWEYEEDDRENGIRGGWVLTDITNGKTSVYLSPKLEQLLNEELDPENF
Ga0335064_0004320_1924_2091	F044325	N/A	MKQLIQRLLFGYRSNPHAYTPKGGAKLTYKGGNAEAIHSALVLMQYNIRNAERIN
Ga0335064_0004320_54_239	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKIDLIMPLLEWNLKGKFEWEII
Ga0335064_0004320_816_1232	F041191	N/A	MKLLYKPTKLTCEFVISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRLGRYQIGELVKVRLHWGYYIECKANDGYAFRVAPKCSFPIGYLLYPYAEKDGVEGIEVPIEIDIMNLCVS