Scaffold Ga0335064_0000179

Overview

Basic Information

• Taxon OID: 3300034357
• Scaffold ID: Ga0335064_0000179
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37210
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (75.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015592	Metagenome / Metatranscriptome	253	Y
F029429	Metagenome / Metatranscriptome	188	Y
F056413	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335064_0000179_14474_14620	F056413	AGGCGG	MMWTPDKDAELLKYYEHGLRPAYMSAQMGLTIASVEGRYRKLKKGLSK
Ga0335064_0000179_16443_16655	F015592	GAGG	MKFLTALLGVLNKLLGFWVEHRWKRQGRQETIKEINEVINEQIALGEAAIVIPDPERTERLRDRFDRSRK
Ga0335064_0000179_5210_5437	F029429	GGA	MTPSKLKLARMYLGYSLTDMADALRLSPTTGATTIRKMEAGKVNITGPIMVAVDAMMKGYDPFGYGEEDMLDGGY