Scaffold Ga0335048_0317928

Overview

Basic Information

• Taxon OID: 3300034356
• Scaffold ID: Ga0335048_0317928
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 801
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009503	Metagenome / Metatranscriptome	317	Y
F014089	Metagenome / Metatranscriptome	266	Y
F024931	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335048_0317928_164_655	F024931	GGTGG	MKMTLTREEETICMLAAVKLQVDNRKFMDNPQRHQKELGTFEYLVESAEAIGSEWVVAKYFDLPFNPYENKFKVKADVGNAIEVRWTKYVTGQLIIHEYDRPNDIAVLVTGQSPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGQSAI
Ga0335048_0317928_22_183	F009503	AGGA	MDKVQFECRKCKKVTTQIIHKITDNLPDGVEVIQCTKCEVMGVAQIGTSNANL
Ga0335048_0317928_652_792	F014089	N/A	MKNGEVIAEYKVEQCDGCALVTKLDAFGYKIGQAGEKLAWLCGGCR