NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335048_0039654

Scaffold Ga0335048_0039654


Overview

Basic Information
Taxon OID3300034356 Open in IMG/M
Scaffold IDGa0335048_0039654 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3128
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048782Metagenome147N
F078244Metagenome / Metatranscriptome116N
F081250Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0335048_0039654_1498_1935F078244N/AMTGAFLNFLYIYVYMKDIINETFKKHLKLLHGRLNENFDEDAYDKVDKFIKNAVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRLDNPDIVTPGIGGKTNTSHVDVEDEDDDASGKRLGYKL
Ga0335048_0039654_2025_3077F081250N/AMNFNYRDFFIHNDDLHIIKEQLSIIDEMARVANDNALEPNAEAVWKMYDKGGELDNEKIAANLGINVDTVKKIIDICEKKFLENKTVIQIANEMKLTDNTINVVLNNAIPDWERAQDRHFTKDAEEIYNLYKSGIKEPEKIVNLINQNRKQYLQIKEEKVNLVLKIVDIATKQMENDGVTNTREIERQINHTITRYTINKLIKNLGIGKIRYMHKFTEKQDAFILFNYLQGIGPSEIARKFNTEFSTDSNKLNIGDGAIYARIKNTILKSDSESKISEYALELLGMYKDIYFQAVNIEDPKTKNLLTHYTPPETIKGKDKTGTGTNRDMSAHLGTVQTNFNTMLPPYYKS
Ga0335048_0039654_518_1081F048782GGTGGMDIIDVTDRYPVTGLHWKLNVVGQENNEFGLGEYMQCVMVKRPDKEIDVTKVDVSVIEHALKVKGVNRYYVRNSMSRSLFSLFGGFGVDDDVYDDVWRMYNRDPWNRRFPKFVDGSVEDMYINSSYAARVSYGFWVYYRDRVISGDISDDTNYGVRYISEVPVLILHTTTIEGVTVACLDVVNANKI
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