Basic Information | |
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Taxon OID | 3300034356 Open in IMG/M |
Scaffold ID | Ga0335048_0039654 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3128 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F048782 | Metagenome | 147 | N |
F078244 | Metagenome / Metatranscriptome | 116 | N |
F081250 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335048_0039654_1498_1935 | F078244 | N/A | MTGAFLNFLYIYVYMKDIINETFKKHLKLLHGRLNENFDEDAYDKVDKFIKNAVMADSQMELMKNRDSLILIVKTFMEAIGRKPYSDRTVEIHIDAVMSGSSRYVSRLDNPDIVTPGIGGKTNTSHVDVEDEDDDASGKRLGYKL |
Ga0335048_0039654_2025_3077 | F081250 | N/A | MNFNYRDFFIHNDDLHIIKEQLSIIDEMARVANDNALEPNAEAVWKMYDKGGELDNEKIAANLGINVDTVKKIIDICEKKFLENKTVIQIANEMKLTDNTINVVLNNAIPDWERAQDRHFTKDAEEIYNLYKSGIKEPEKIVNLINQNRKQYLQIKEEKVNLVLKIVDIATKQMENDGVTNTREIERQINHTITRYTINKLIKNLGIGKIRYMHKFTEKQDAFILFNYLQGIGPSEIARKFNTEFSTDSNKLNIGDGAIYARIKNTILKSDSESKISEYALELLGMYKDIYFQAVNIEDPKTKNLLTHYTPPETIKGKDKTGTGTNRDMSAHLGTVQTNFNTMLPPYYKS |
Ga0335048_0039654_518_1081 | F048782 | GGTGG | MDIIDVTDRYPVTGLHWKLNVVGQENNEFGLGEYMQCVMVKRPDKEIDVTKVDVSVIEHALKVKGVNRYYVRNSMSRSLFSLFGGFGVDDDVYDDVWRMYNRDPWNRRFPKFVDGSVEDMYINSSYAARVSYGFWVYYRDRVISGDISDDTNYGVRYISEVPVLILHTTTIEGVTVACLDVVNANKI |
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