Scaffold Ga0335048_0029025

Overview

Basic Information

• Taxon OID: 3300034356
• Scaffold ID: Ga0335048_0029025
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3775
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F042157	Metagenome	158	N
F049410	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335048_0029025_1741_2157	F041191	N/A	MKLLWKPTKLTCEFIVPDLDKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYINGKRVIQRLGRFEIGEIVSVVLQWGYYIECKANDKYAFRVAPKRSFPIGYQLYPYAEKDGVRGVEVPIEIEINNLIIK
Ga0335048_0029025_3271_3456	F049410	GGA	MTRGTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKVDLIMPLLEWNLKGKFEWEIT
Ga0335048_0029025_3458_3712	F042157	GGA	MKLKQKYNAPDNKQLKKIADYLIYVLLPFIQTSLALAETHGLITLKQAFWGGLAATFLLVNTKFLTKFTTETPTTAPLLDGDGC