NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335048_0015395

Scaffold Ga0335048_0015395


Overview

Basic Information
Taxon OID3300034356 Open in IMG/M
Scaffold IDGa0335048_0015395 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5511
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009331Metagenome / Metatranscriptome319Y
F016642Metagenome245N

Sequences

Protein IDFamilyRBSSequence
Ga0335048_0015395_1386_1565F009331AGGAGMICSNCMKGGEENSLTHYKRASNWHEKCNDKGCVCQHKTGPGYVKREGSKVPLMQTQSP
Ga0335048_0015395_1562_2005F016642GAGLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGNNFEVRTVRTRDSIPFWSKDNGKILVGTKIFDEDYYSQVEVYGYCNPEEYATSQYRDEVIGGWRVPVTELKEFK
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