NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335039_0336301

Scaffold Ga0335039_0336301


Overview

Basic Information
Taxon OID3300034355 Open in IMG/M
Scaffold IDGa0335039_0336301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)790
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043357Metagenome / Metatranscriptome156Y
F048254Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0335039_0336301_368_562F048254AGGAGGMVGDERMAATLKTLAVGESCRLPSRYRLELTVRNMLARTGYRWTVIEVITPQENTRRFTVTRTA
Ga0335039_0336301_559_789F043357GAGGMSENIFAPFFGAVEDGAREREAREYGRDGPHSRWDPGEMPWGIPRRIHPEYRERLSSDPIDWPTVGQSGLTSDEGRC

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