Scaffold Ga0335039_0301984

Overview

Basic Information

• Taxon OID: 3300034355
• Scaffold ID: Ga0335039_0301984
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 847
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335039_0301984_244_528	F019136	GAG	MIGEVIETETEYSFRVGYNGLPYTIKIFRTKLITNEYEMVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVKYKPKAQGVNNPYYSNGPF
Ga0335039_0301984_3_140	F017826	N/A	MEKLKRIWNVVLVPTAFFLGALNMWIGETAVGCMFILFATNETINN
Ga0335039_0301984_566_721	F031867	N/A	MKIIYMQRTIEMIVKNEIKLSADSLLNTKPTRVETHKEQNYLVYEFDNNEL