NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335039_0288439

Scaffold Ga0335039_0288439


Overview

Basic Information
Taxon OID3300034355 Open in IMG/M
Scaffold IDGa0335039_0288439 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)873
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F019128Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0335039_0288439_3_470F002259N/AMGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSITTAALTHTFFKGAAQRVFPLTNVGANGNQFQVDEALLVEKIGFFIPTDATGATYLGLVGNSVKFDLVIGNKTVIKDATCEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKTFN
Ga0335039_0288439_505_858F019128N/AMSAGKAALGGVAAAFLSNTVGKQLGDKYAPYTGLVGSIATSLFLKQPEIAAGMAGYSGAKIGQALLGADSAIGALLAENSYAVSPSMYLQGYDTPGMAGEGIYASDYTLAGYDIPGL
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