Scaffold Ga0335039_0066335

Overview

Basic Information

• Taxon OID: 3300034355
• Scaffold ID: Ga0335039_0066335
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2143
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F007751	Metagenome / Metatranscriptome	345	Y
F010836	Metagenome / Metatranscriptome	298	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335039_0066335_1214_1477	F002303	N/A	MDIREQYRERAIQFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADTDCRNNIFLLTMCKANCFLNQF
Ga0335039_0066335_3_464	F010836	N/A	YEDLVDNLKSELKDNSDYVDYGKTDHNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKIKNEIVDELEALYNDYSDRYGVTAVFSNGETIYHKL
Ga0335039_0066335_475_687	F007751	N/A	MNQIEELKSVIGKDISQNQSPTCRARLVSVGKANCIFESVPSPYNKFPKPEFVGVKYKVPNWIAWNSFFY